CandidaMine documentation!

CandidaMine is an integrative data warehouse for Candida Species genomes and transcriptomes. Powered by InterMine, it provides a user-friendly way to access genomic, proteomic, interaction and literature data.

This user guide is aimed at giving users an introduction to the different parts of CandidaMine and how users can make the most of CandidaMine.

Main site: http://candidamine.org/

User Guide

• CandidaMine Overview
  • Home Page
  • Searching CandidaMine
    • Keywords search
    • Genomic Regions Search
• Report Page
  • Summary
  • Genomics
  • Proteins
  • Homology
  • Expression
  • Interactions
  • Other
• Template Queries
  • Generate query code
  • Download results
  • Customize output
  • Optional filters
  • Examples
    • Genes to Proteins
    • INDELS in coding regions
• Query Buidler
  • Model browser
  • Examples
    • Example : Querying for INDELS in coding regions
• Lists
  • Creating Lists
    • Creating list example
  • Saving Lists
• MyMine
  • Create an account
  • Lists
  • History
  • Queries
  • Templates
  • Password
  • Account Details
• Intermine API

Technical Docs

• Technicals
• Data Sources
• Source code
• Issues